Mage-ml.xsl
From BioWeka
Contents |
Description
This stylesheet converts internal as well as external microarray data (microarray data which is stored in DataInternal elements or referenced by DataExternal elements) from MAGE-ML files into the ARFF format. The first microarray table stored in a DataInternal element, or referenced by a DataExternal element if no DataInternal element is available, is written out as standard output, i.e. when the XslXmlLoader class is used this microarray table is loaded into Weka. The following microarray tables are stored as external ARFF files in the directory of the source MAGE-ML file. All data is assumed to be numeric.
Prerequisites
Application
The Saxon 8.4 XSLT processor is required because this is a XSLT 2.0 stylesheet (following the XSLT 2.0 working draft from April 2005). To make the Saxon processor the default processor edit the jaxp.properties file in the lib directory of your Java installation and add the following line:
javax.xml.transform.TransformerFactory=net.sf.saxon.TransformerFactoryImpl
