Overview
From BioWeka
Contents |
How-to's
The following pages describe how to
- start with BioWeka
- configure Weka for BioWeka
- call BioWeka from the command line
- integrate BioWeka into YALE
- monitor BioWeka
- contribute to BioWeka
Documentation
BioWeka consists of several parts that are explained in detail on the following pages:
- BioWeka components: the Weka extensions, i.e. the BioWeka library
- Standalone tools: programs that do not require Weka, but are related to Weka, e.g. external converters
- Data sets: data files that are used in conjunction with the BioWeka components, e.g. substitution matrices or the Amino Acid Index database
- XML stylesheets: XSL stylesheets to convert XML files into ARFF files
Documents
There are in addition some external documents that describe the BioWeka usage and/or implementation:
[1] BioWeka: Extending the Weka framework for bioinformatics, Martin Szugat, Bachelor Thesis, 2005, Ludwig Maximilians-Universität, Technische Universität München
[2] Addendum - BioWeka: Extending the Weka framework for bioinformatics, Martin Szugat, 2006, Ludwig Maximilians-Universität, Technische Universität München
Help
The Help page describes how to get help in the best way, i.e. it describes when and how to use one of the following resources:
- FAQ: Frequently asked questions about BioWeka
- Known problems: Collection of known problems with BioWeka and their solutions or workarounds
- Forum: BioWeka's help forum
- Mailing list: BioWeka's user mailing list
- Request tracker: Database of reported bugs and requested features
Publications
There also some (scientific) publications that might help you to understand and use BioWeka:
Jan E. Gewehr¹, Martin Szugat¹ and Ralf Zimmer. BioWeka - extending the Weka framework for bioinformatics. Bioinformatics. 2007 Mar 1;23(5):651-3. HTML
¹authors contributed equally
