Iprscan.xsl can't load XML files
From BioWeka
Contents |
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Applies to
- BioWeka, any version
-
iprscan.xsl, any version - InterProScan 4.1 or earlier
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Symptom
The XslXmlLoader can not load the XML file.
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Cause
InterProScan produces invalid XML output.
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Resolution
We recommend to use the version 4.1 of InterProScan. In addition the file bin/converter.pl has to be fixed. Replace the line 554 with the following code:
my $name;
$name = xml_quote($results{$seq}{$k}{$hit}{'name'});
print "\t <match id=\"$hit\" name=\"$name\" dbname=\"", Index::InterPro->getDBname($k), "\">\n";
The BioWeka distribution contains also a fixed version of the file bin/converter.pl. See directory etc/patches/iprscan/bin.
