Extract-internal-data-from-mage-ml.xsl

From BioWeka

Contents 1 Description 2 Prerequisites 3 Application 4 See also

Description

This stylesheet extracts internal microarray data (microarray data which is stored in DataInternal elements and not just referenced by DataExternal elements) from MAGE-ML files.

Prerequisites

• Saxon 8.4

Application

The Saxon 8.4 XSLT processor is required because this is a XSLT 2.0 stylesheet (following the XSLT 2.0 working draft from April 2005). To process the XSLT stylesheet on Windows use the following command (assuming mage-ml.xml is the MAGE-ML file):

java -jar saxon8.jar mage-ml.xml extract-internal-data-from-mage-ml.xsl

This generates zero, one or more text files within the current directory, depending on the number of DataInternal elements. Each file has a unique name like d1e29645.txt which depends on the position of the corresponding DataInternal element within the MAGE-ML files.

See also

• CSVLoader from BioWeka or
• CSVLoader class from Weka (may not work with every tab-delimited file)